PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008518m
Common NameEUTSA_v10008518mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 261aa    MW: 28977.7 Da    PI: 4.7521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008518mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1891140355
              AP2   3 ykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrd      ++  r++lg+f+taeeAa a+++a+ +l+g
  Thhalv10008518m  91 YRGVRKRP-WGKYAAEIRD----SmRKgIRVWLGTFDTAEEAALAYDQAAFALKG 140
                      9*******.**********....44235***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-3890154IPR001471AP2/ERF domain
PROSITE profilePS5103223.06490148IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2290150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-3090149IPR001471AP2/ERF domain
PfamPF008475.0E-1391140IPR001471AP2/ERF domain
PRINTSPR003674.3E-1191102IPR001471AP2/ERF domain
CDDcd000182.53E-3191150No hitNo description
PRINTSPR003674.3E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MESQTTLFSN NQSQELSPEF SSSTSSWSSQ ESFLWEESFL HQSFDQPYLS FSPCYNYSDD  60
DFFTFGASSI IKEEDEEGAT VQTEEEEERA YRGVRKRPWG KYAAEIRDSM RKGIRVWLGT  120
FDTAEEAALA YDQAAFALKG SLAVLNFPVQ VVKESLQKME NVNFNDGESP VIVLKRKHSM  180
RNRPRGKKKS SSSSSSSSSS SSSSLSTSSS SSSYSSSSSS SLSSRSRKQS VVMKQESSTT  240
LVVFEDLGAE YLEELLRSCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2789151163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417952.10.0hypothetical protein EUTSA_v10008518mg
SwissprotQ9LND12e-90ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLV4KEX20.0V4KEX2_EUTSA; Uncharacterized protein
STRINGBra032433.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.13e-73octadecanoid-responsive Arabidopsis AP2/ERF 59